AfterQC
Supported Tool
Automatic filtering, trimming, error removing, and quality control for FastQ data
AfterQC goes through all FastQ files in a folder and outputs three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair.
File search patterns
afterqc:
contents: allow_mismatch_in_poly
fn: "*.json"
num_lines: 10000