Conpair
Supported Tool
Estimates concordance and contamination for tumor–normal pairs
Useful for tumor-normal studies. Performs concordance verification (= samples coming from the same individual), and cross-individual contamination level estimation in WGS and WES sequencing experiments
File search patterns
conpair/concordance:
contents: markers (coverage per marker threshold
num_lines: 3
conpair/contamination:
contents: "Tumor sample contamination level: "
num_lines: 3