Kallisto
Supported Tool
Quantifies abundances of transcripts (or more generally, of target sequences) from RNA-Seq data
Note - MultiQC parses the standard out from Kallisto, not any of its output files
(abundance.h5, abundance.tsv, and run_info.json). As such, you must capture the
Kallisto stdout to a file when running to use the MultiQC module.
File search patterns
kallisto:
contents: "[quant] finding pseudoalignments for the reads"